To facilitate the positioning of the clone on the chr. 22 sequence, the ends have been sequences and Blast search performed.
bC72M14 - SP6 end
ACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTT
GCATGCCTGCAGGTCGACTCTAGAGGATCCCATTTTTACCTCAAATATTG
ATTTTGGCTCTCAGGTCCCCTCAAGCAACTATGTCAGTGATTTTTTTCCA
TACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAAAACACAAAAA
TCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA
TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACT
GTATCCAAGCCAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTC
AGTTTCTGTCAGAACTTCCAAACCCAGTGTTGATCAAAAATTTGCTCAAA
CAAACTCAGAGACTCAATCTCTGAGCAAATCTGTGGAGCCTACATCTGAG
GAGAACTTACCAAGATCCCAGTGCTGTT
MASKED
ACCATGATTACGCCAAGCTATTTAGGTGACACTATAGAATACTCAAGCTT
GCATGCCTGCAGGTCGACTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGTGCTGTT
Blast search results:
>gb|AC000029.17|AC000029
Homo sapiens Chromosome 22q11.2 BAC Clone bK865e9 In GNAZ-BCR
Region,
complete sequence Length = 142,979 bp
......
Query: 71 TAGAGGATCCCATTTTTACCTCAAATATTGATTTTGGCTCTCAGGTCCCCTCAAGCAACT
130
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26064 TAAAGGATCCCATTTTTACCTCAAATATTGACTTTGGCTCTCAGGTCCCCTCAAGCAACT
26123
Query: 131 ATGTCAGTGATTTTTTTCCATACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAA
190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26124 ATGTCAGTGATTTTTTTCCATACCTAAGTGTACAGGAAAAAAGAAACAAAGGAAGTAGAA
26183
Query: 191 AACACAAAAATCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA
250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26184 AACACAAAAATCCCTGTGGACTTCCAAAAGCCAAAGTTTACACCCCCTGCAATATTGCCA
26243
Query: 251 TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACTGTATCCAAGC
310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26244 TCTGCTACTGGTTTCTTTCTGACCCAGTCAGACAAAAGAGGCCCCTAACTGTATCCAAGC
26303
Query: 311 CAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTCAGTTTCTGTCAGAACTTCCA
370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26304 CAGTTAATTATCAGATACAATCCAATTGTAGACTCAGTTCAGTTTCTGTCAGAACTTCCA
26363
Query: 371 AACCCAGTGTTGATCAAAAATTTGCTCAAACAAACTCAGAGA-CTCAA-TCTCTGAGCAA
428
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 26364 AACCCAGTGTTGATCAAAAATTTGCTCAAACAAACTCAGAGAACTCAAATCTCTGAGCAA
26423
Query: 429 ATCTGTGGAGCCT-ACA-TCTGAGG-AGAACTTACCAAGATCCC-AGT-GCTGT
477
||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 26424 ATCTGTGGAGCCTCACAATCTGAGGGAGAACTTACCAAGATCCCCAGTTGCTGT
26477
bC72M14 - T7 end
>gb|U07000.1|HSU07000 Human breakpoint cluster region (BCR) gene, complete cds Length = 152141 Score = 44.1 bits (22), Expect = 8e-04 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 atgctggtcaggtaaagggtgg 25 |||||||||||||||||||||| Sbjct: 66639 atgctggtcaggtaaagggtgg 66618